ENSG00000168883


Homo sapiens

Features
Gene ID: ENSG00000168883
  
Biological name :USP39
  
Synonyms : Q53GS9 / ubiquitin specific peptidase 39 / USP39
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: p11.2
Gene start: 85602856
Gene end: 85649282
  
Corresponding Affymetrix probe sets: 217829_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000392911
Ensembl peptide - ENSP00000386864
Ensembl peptide - ENSP00000396133
Ensembl peptide - ENSP00000484024
Ensembl peptide - ENSP00000479885
Ensembl peptide - ENSP00000400690
Ensembl peptide - ENSP00000396854
Ensembl peptide - ENSP00000312981
Ensembl peptide - ENSP00000386572
Ensembl peptide - ENSP00000386803
NCBI entrez gene - 10713     See in Manteia.
OMIM - 611594
RefSeq - XM_017003182
RefSeq - NM_001256725
RefSeq - NM_001256726
RefSeq - NM_001256727
RefSeq - NM_001256728
RefSeq - NM_006590
RefSeq - XM_006711922
RefSeq - XM_006711923
RefSeq - XM_011532487
RefSeq - XM_011532488
RefSeq Peptide - NP_001243654
RefSeq Peptide - NP_001243656
RefSeq Peptide - NP_001243657
RefSeq Peptide - NP_006581
RefSeq Peptide - NP_001243655
swissprot - F8WC91
swissprot - A0A087WW31
swissprot - Q53GS9
swissprot - C9JIU2
swissprot - C9J0X5
swissprot - B9A018
swissprot - A0A087X1B2
Ensembl - ENSG00000168883
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 usp39ENSDARG00000041908Danio rerio
 Usp39ENSMUSG00000056305Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR001607  Zinc finger, UBP-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR028889  Ubiquitin specific protease domain
 IPR033809  USP39


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly TAS
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006397 mRNA processing TAS
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0008380 RNA splicing TAS
 biological_processGO:0016579 protein deubiquitination IEA
 biological_processGO:0051301 cell division IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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