ENSDARG00000042057


Danio rerio

Features
Gene ID: ENSDARG00000042057
  
Biological name :trmt1l
  
Synonyms : trmt1l / tRNA methyltransferase 1-like
  
Possible biological names infered from orthology : Mus musculus tRNA methyltransferase 1 like (Trmt1l), transcript variant 3, mRNA. / Q7Z2T5
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 34388425
Gene end: 34399442
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000114812
Ensembl peptide - ENSDARP00000121707
Ensembl peptide - ENSDARP00000156040
NCBI entrez gene - 559583     See in Manteia.
RefSeq - XM_682939
swissprot - F1QK14
swissprot - F1R3Q4
ZFIN ID - ZDB-GENE-041014-189
Ensembl - ENSDARG00000042057
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRMT1LENSGALG00000033077Gallus gallus
 Q7Z2T5ENSG00000121486Homo sapiens
 Trmt1lENSMUSG00000053286Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trmt1 / tRNA methyltransferase 1 / Q9NXH9*ENSDARG0000001097815


Protein motifs (from Interpro)
Interpro ID Name
 IPR002905  tRNA methyltransferase, Trm1
 IPR013087  Zinc finger C2H2-type
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0030488 tRNA methylation IEA
 biological_processGO:0032259 methylation IEA
 molecular_functionGO:0000049 tRNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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