ENSDARG00000010978


Danio rerio

Features
Gene ID: ENSDARG00000010978
  
Biological name :trmt1
  
Synonyms : trmt1 / tRNA methyltransferase 1
  
Possible biological names infered from orthology : Q9NXH9
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 31236001
Gene end: 31258356
  
Corresponding Affymetrix probe sets: Dr.5214.1.S1_at (Zebrafish Array)   XM_680794_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000111075
NCBI entrez gene - 553298     See in Manteia.
RefSeq - XM_680794
swissprot - F1QGD9
ZFIN ID - ZDB-GENE-060810-40
Ensembl - ENSDARG00000010978
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRMT1ENSG00000104907Homo sapiens
 Trmt1ENSMUSG00000001909Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trmt1l / tRNA methyltransferase 1-like / Q7Z2T5* / Mus musculus tRNA methyltransferase 1 like (Trmt1l), transcript variant 3, mRNA.*ENSDARG0000004205715


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type
 IPR002905  tRNA methyltransferase, Trm1
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002940 tRNA N2-guanine methylation IBA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0032259 methylation IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005739 mitochondrion IBA
 molecular_functionGO:0000049 tRNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004809 tRNA (guanine-N2-)-methyltransferase activity IBA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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