ENSG00000104907


Homo sapiens

Features
Gene ID: ENSG00000104907
  
Biological name :TRMT1
  
Synonyms : Q9NXH9 / TRMT1 / tRNA methyltransferase 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: -1
Band: p13.13
Gene start: 13104902
Gene end: 13117567
  
Corresponding Affymetrix probe sets: 203701_s_at (Human Genome U133 Plus 2.0 Array)   210463_x_at (Human Genome U133 Plus 2.0 Array)   216454_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000468031
Ensembl peptide - ENSP00000467984
Ensembl peptide - ENSP00000468377
Ensembl peptide - ENSP00000221504
Ensembl peptide - ENSP00000350352
Ensembl peptide - ENSP00000416149
Ensembl peptide - ENSP00000465370
Ensembl peptide - ENSP00000466716
Ensembl peptide - ENSP00000466966
Ensembl peptide - ENSP00000466967
Ensembl peptide - ENSP00000467938
NCBI entrez gene - 55621     See in Manteia.
OMIM - 611669
RefSeq - XM_017026947
RefSeq - NM_001136035
RefSeq - NM_001142554
RefSeq - NM_001351761
RefSeq - NM_017722
RefSeq - XM_006722793
RefSeq - XM_011528124
RefSeq - XM_011528125
RefSeq - XM_017026944
RefSeq - XM_017026945
RefSeq - XM_017026946
RefSeq Peptide - NP_001338689
RefSeq Peptide - NP_001129507
RefSeq Peptide - NP_001338690
RefSeq Peptide - NP_060192
RefSeq Peptide - NP_001136026
swissprot - K7EQU7
swissprot - K7EQY6
swissprot - K7ERR5
swissprot - A0A024R7I5
swissprot - Q9NXH9
swissprot - K7EJX9
swissprot - K7EMZ2
swissprot - K7ENI9
swissprot - K7EQQ8
Ensembl - ENSG00000104907
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trmt1ENSDARG00000010978Danio rerio
 Trmt1ENSMUSG00000001909Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q7Z2T5 / TRMT1L / tRNA methyltransferase 1 likeENSG0000012148615


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type
 IPR002905  tRNA methyltransferase, Trm1
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase
 IPR036855  Zinc finger, CCCH-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002940 tRNA N2-guanine methylation IBA
 biological_processGO:0006400 tRNA modification TAS
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0030488 tRNA methylation IEA
 biological_processGO:0032259 methylation IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005739 mitochondrion IBA
 molecular_functionGO:0000049 tRNA binding IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0004809 tRNA (guanine-N2-)-methyltransferase activity IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
tRNA modification in the nucleus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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