ENSDARG00000042236


Danio rerio

Features
Gene ID: ENSDARG00000042236
  
Biological name :atrx
  
Synonyms : alpha thalassemia/mental retardation syndrome X-linked homolog (human) / atrx
  
Possible biological names infered from orthology : ATRX, chromatin remodeler / P46100 / Q61687 / Transcriptional regulator ATRX
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 10656975
Gene end: 10737898
  
Corresponding Affymetrix probe sets: Dr.26404.2.S1_at (Zebrafish Array)   Dr.5568.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000105895
Ensembl peptide - ENSDARP00000109014
NCBI entrez gene - 323299     See in Manteia.
RefSeq - XM_021480976
RefSeq - NM_200653
RefSeq Peptide - NP_956947
swissprot - F1QJ36
swissprot - E7F4M2
ZFIN ID - ZDB-GENE-030912-11
Ensembl - ENSDARG00000042236
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ATRXENSGALG00000007843Gallus gallus
 ATRXENSG00000085224Homo sapiens
 AtrxENSMUSG00000031229Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
atrxl / alpha thalassemia/mental retardation syndrome X-linked, likeENSDARG0000009944938
rad54l2 / RAD54 like 2 / Q9Y4B4* / RAD54 like 2 (S. cerevisiae)*ENSDARG0000006303117
rad54b / RAD54 homolog B (S. cerevisiae) / FSBP* / O95073* / Q6PFE3* / Q9Y620* / fibrinogen silencer binding protein* / DNA repair and recombination protein RAD54B *ENSDARG0000009213411
rad54l / RAD54 like / P70270* / Q92698* / DNA repair and recombination protein RAD54-like *ENSDARG0000001862311


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR001650  Helicase, C-terminal
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR025766  ADD domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr