ENSDARG00000092134


Danio rerio

Features
Gene ID: ENSDARG00000092134
  
Biological name :rad54b
  
Synonyms : rad54b / RAD54 homolog B (S. cerevisiae)
  
Possible biological names infered from orthology : DNA repair and recombination protein RAD54B / fibrinogen silencer binding protein / FSBP / O95073 / Q6PFE3 / Q9Y620
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 26732086
Gene end: 26758184
  
Corresponding Affymetrix probe sets: XM_683887_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000153235
Ensembl peptide - ENSDARP00000157024
Ensembl peptide - ENSDARP00000113995
Ensembl peptide - ENSDARP00000145152
Ensembl peptide - ENSDARP00000150108
NCBI entrez gene - 560482     See in Manteia.
RefSeq - XM_683887
swissprot - E9QHY4
ZFIN ID - ZDB-GENE-060810-50
Ensembl - ENSDARG00000092134
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAD54BENSGALG00000043597Gallus gallus
 FSBPENSG00000265817Homo sapiens
 Q9Y620ENSG00000197275Homo sapiens
 Q6PFE3ENSMUSG00000078773Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rad54l / RAD54 like / P70270* / Q92698* / DNA repair and recombination protein RAD54-like *ENSDARG0000001862332
atrx / alpha thalassemia/mental retardation syndrome X-linked homolog (human) / P46100* / Q61687* / ATRX, chromatin remodeler* / Transcriptional regulator ATRX *ENSDARG0000004223624
rad54l2 / RAD54 like 2 / Q9Y4B4* / RAD54 like 2 (S. cerevisiae)*ENSDARG0000006303122
atrxl / alpha thalassemia/mental retardation syndrome X-linked, likeENSDARG0000009944922


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR001650  Helicase, C-terminal
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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