ENSGALG00000007843


Gallus gallus

Features
Gene ID: ENSGALG00000007843
  
Biological name :ATRX
  
Synonyms : ATRX / ATRX, chromatin remodeler
  
Possible biological names infered from orthology : P46100 / Q61687 / Transcriptional regulator ATRX
  
Species: Gallus gallus
  
Chr. number: 4
Strand: -1
Band:
Gene start: 12860852
Gene end: 12935606
  
Corresponding Affymetrix probe sets: Gga.9229.1.S1_at (Chicken Array)   Gga.9229.2.S1_a_at (Chicken Array)   Gga.9668.1.S1_s_at (Chicken Array)   GgaAffx.22384.1.S1_s_at (Chicken Array)   GgaAffx.22386.1.S1_at (Chicken Array)   GgaAffx.22386.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000012723
Ensembl peptide - ENSGALP00000058311
NCBI entrez gene - 422331     See in Manteia.
RefSeq - XM_420305
RefSeq - XM_015278593
RefSeq - XM_015278594
RefSeq - XM_004940797
RefSeq - XM_015278592
swissprot - E1C8H5
swissprot - A0A1D5PZA1
Ensembl - ENSGALG00000007843
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atrxENSDARG00000042236Danio rerio
 ATRXENSG00000085224Homo sapiens
 AtrxENSMUSG00000031229Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RAD54L2 / RAD54 like 2 / Q9Y4B4* / RAD54 like 2 (S. cerevisiae)*ENSGALG0000000324315
RAD54B / DNA repair and recombination protein RAD54B / FSBP* / O95073* / Q6PFE3* / Q9Y620* / RAD54 homolog B (S. cerevisiae)* / fibrinogen silencer binding protein*ENSGALG000000435979
RAD54L / DNA repair and recombination protein RAD54-like / P70270* / Q92698* / RAD54 like*ENSGALG000000103569


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR001650  Helicase, C-terminal
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR025766  ADD domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000212 meiotic spindle organization IEA
 biological_processGO:0006334 nucleosome assembly IEA
 biological_processGO:0006336 DNA replication-independent nucleosome assembly IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0010571 positive regulation of nuclear cell cycle DNA replication IEA
 biological_processGO:0030330 DNA damage response, signal transduction by p53 class mediator IEA
 biological_processGO:0030900 forebrain development IEA
 biological_processGO:0031297 replication fork processing IEA
 biological_processGO:0032206 positive regulation of telomere maintenance IEA
 biological_processGO:0035128 post-embryonic forelimb morphogenesis IEA
 biological_processGO:0035264 multicellular organism growth IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0060009 Sertoli cell development IEA
 biological_processGO:0070192 chromosome organization involved in meiotic cell cycle IEA
 biological_processGO:0070198 protein localization to chromosome, telomeric region IEA
 biological_processGO:0072520 seminiferous tubule development IEA
 biological_processGO:0072711 cellular response to hydroxyurea IEA
 biological_processGO:1900112 regulation of histone H3-K9 trimethylation IEA
 biological_processGO:1901581 negative regulation of telomeric RNA transcription from RNA pol II promoter IEA
 biological_processGO:1901582 positive regulation of telomeric RNA transcription from RNA pol II promoter IEA
 biological_processGO:1904908 negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric IEA
 cellular_componentGO:0000228 nuclear chromosome IEA
 cellular_componentGO:0000780 condensed nuclear chromosome, centromeric region IEA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IEA
 cellular_componentGO:0000792 heterochromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005721 pericentric heterochromatin IEA
 cellular_componentGO:0016604 nuclear body IEA
 cellular_componentGO:0016605 PML body IEA
 cellular_componentGO:0031618 nuclear pericentric heterochromatin IEA
 cellular_componentGO:0031933 telomeric heterochromatin IEA
 cellular_componentGO:0070603 SWI/SNF superfamily-type complex IEA
 cellular_componentGO:1990707 nuclear subtelomeric heterochromatin IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0015616 DNA translocase activity IEA
 molecular_functionGO:0035064 methylated histone binding IEA
 molecular_functionGO:0042393 histone binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0070087 chromo shadow domain binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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