ENSDARG00000042508


Danio rerio

Features
Gene ID: ENSDARG00000042508
  
Biological name :ubr3
  
Synonyms : F1QJX5 / ubiquitin protein ligase E3 component n-recognin 3 / ubr3
  
Possible biological names infered from orthology : Q5U430 / Q6ZT12 / ubiquitin protein ligase E3 component n-recognin 3 (putative)
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 3898132
Gene end: 4018452
  
Corresponding Affymetrix probe sets: Dr.8532.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000111269
Ensembl peptide - ENSDARP00000062335
Ensembl peptide - ENSDARP00000156490
NCBI entrez gene - 553247     See in Manteia.
swissprot - A0A240I9X0
swissprot - F1QJX5
ZFIN ID - ZDB-GENE-030131-1473
Ensembl - ENSDARG00000042508
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000009608Gallus gallus
 ENSGALG00000035605Gallus gallus
 UBR3ENSG00000144357Homo sapiens
 Ubr3ENSMUSG00000044308Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ubr2 / ubiquitin protein ligase E3 component n-recognin 2 / Q6WKZ8* / Q8IWV8*ENSDARG0000007016418
LO018474.1 / UBR1* / Q8IWV7* / ubiquitin protein ligase E3 component n-recognin 1*ENSDARG0000010430611
ubr1 / ubiquitin protein ligase E3 component n-recognin 1 / O70481* / Q8IWV7*ENSDARG000000604804


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR003126  Zinc finger, UBR-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0048592 eye morphogenesis IMP
 biological_processGO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway IBA
 cellular_componentGO:0000151 ubiquitin ligase complex IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000050 optic vesicle optic vesicle epithelium morphology , abnormal
optic vesicle epithelium disorganized , abnormal
Show

 ZFA:0000155 somite somite morphology , abnormal
somite U-shaped , abnormal
Show

 ZFA:0001094 whole organism whole organism has extra parts of type Rohon-Beard neuron , abnormal
Show

 ZFA:0001678 immature eye immature eye decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr