ENSDARG00000070164


Danio rerio

Features
Gene ID: ENSDARG00000070164
  
Biological name :ubr2
  
Synonyms : ubiquitin protein ligase E3 component n-recognin 2 / ubr2
  
Possible biological names infered from orthology : Q6WKZ8 / Q8IWV8
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 3263853
Gene end: 3324773
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000093524
Ensembl peptide - ENSDARP00000103408
NCBI entrez gene - 559136     See in Manteia.
RefSeq - XM_005156497
RefSeq - XM_005156498
RefSeq - XM_001921555
swissprot - F1Q745
swissprot - B7ZDA3
ZFIN ID - ZDB-GENE-081107-29
Ensembl - ENSDARG00000070164
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 UBR2ENSGALG00000009906Gallus gallus
 UBR2ENSG00000024048Homo sapiens
 Ubr2ENSMUSG00000023977Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LO018474.1 / UBR1* / Q8IWV7* / ubiquitin protein ligase E3 component n-recognin 1*ENSDARG0000010430628
ubr3 / F1QJX5 / ubiquitin protein ligase E3 component n-recognin 3 / Q6ZT12* / Q5U430* / ubiquitin protein ligase E3 component n-recognin 3 (putative)*ENSDARG0000004250819
ubr1 / ubiquitin protein ligase E3 component n-recognin 1 / O70481* / Q8IWV7*ENSDARG0000006048011


Protein motifs (from Interpro)
Interpro ID Name
 IPR003126  Zinc finger, UBR-type
 IPR003769  Adaptor protein ClpS, core
 IPR011991  ArsR-like helix-turn-helix domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR014719  Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006342 chromatin silencing IBA
 biological_processGO:0030163 protein catabolic process IEA
 biological_processGO:0033522 histone H2A ubiquitination IBA
 biological_processGO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway IBA
 cellular_componentGO:0000151 ubiquitin ligase complex IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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