ENSDARG00000042864


Danio rerio

Features
Gene ID: ENSDARG00000042864
  
Biological name :rpl7l1
  
Synonyms : ribosomal protein L7-like 1 / rpl7l1
  
Possible biological names infered from orthology : 60S ribosomal protein L7-like 1 / Q6DKI1 / Q9D8M4
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 36675083
Gene end: 36679233
  
Corresponding Affymetrix probe sets: Dr.1961.1.S1_at (Zebrafish Array)   NM_199590_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000062907
NCBI entrez gene - 322251     See in Manteia.
RefSeq - NM_199590
RefSeq Peptide - NP_955884
swissprot - Q6PFJ0
ZFIN ID - ZDB-GENE-030131-970
Ensembl - ENSDARG00000042864
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPL7L1ENSGALG00000011974Gallus gallus
 Q6DKI1ENSG00000146223Homo sapiens
 Q9D8M4ENSMUSG00000063888Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rpl7 / ribosomal protein L7 / P14148* / P18124*ENSDARG0000000732050


Protein motifs (from Interpro)
Interpro ID Name
 IPR005998  Ribosomal protein L7, eukaryotic
 IPR012988  Ribosomal protein L30, N-terminal
 IPR016082  Ribosomal protein L30, ferredoxin-like fold domain
 IPR018038  Ribosomal protein L30, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0002181 cytoplasmic translation IBA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000084 yolk yolk non-functional , abnormal
yolk swollen , abnormal
yolk circular , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000114 heart heart quality , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001115 trunk trunk necrotic , abnormal
trunk curved dorsal , abnormal
trunk decreased thickness , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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