ENSDARG00000007320


Danio rerio

Features
Gene ID: ENSDARG00000007320
  
Biological name :rpl7
  
Synonyms : ribosomal protein L7 / rpl7
  
Possible biological names infered from orthology : P14148 / P18124
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 30177476
Gene end: 30182353
  
Corresponding Affymetrix probe sets: Dr.25458.1.S1_at (Zebrafish Array)   NM_213644_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000018980
NCBI entrez gene - 336710     See in Manteia.
RefSeq - NM_213644
RefSeq Peptide - NP_998809
swissprot - Q6Q417
ZFIN ID - ZDB-GENE-030131-8654
Ensembl - ENSDARG00000007320
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPL7ENSGALG00000035252Gallus gallus
 RPL7ENSG00000147604Homo sapiens
 Rpl7ENSMUSG00000043716Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rpl7l1 / ribosomal protein L7-like 1 / Q6DKI1* / Q9D8M4* / 60S ribosomal protein L7-like 1 *ENSDARG0000004286450


Protein motifs (from Interpro)
Interpro ID Name
 IPR005998  Ribosomal protein L7, eukaryotic
 IPR012988  Ribosomal protein L30, N-terminal
 IPR016082  Ribosomal protein L30, ferredoxin-like fold domain
 IPR018038  Ribosomal protein L30, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0051726 regulation of cell cycle IMP
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000084 yolk yolk circular , abnormal
yolk grey , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
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 ZFA:0000142 peripheral nervous system peripheral nervous system nerve neoplastic , abnormal
peripheral nervous system chromosome amount , abnormal
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 ZFA:0001094 whole organism whole organism decreased size , abnormal
whole organism quality , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001115 trunk trunk decreased thickness , abnormal
trunk curved dorsal , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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