ENSGALG00000035252


Gallus gallus

Features
Gene ID: ENSGALG00000035252
  
Biological name :RPL7
  
Synonyms : 60S ribosomal protein L7 / Q5ZJ56 / RPL7
  
Possible biological names infered from orthology : P14148 / P18124 / ribosomal protein L7
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 118153335
Gene end: 118161820
  
Corresponding Affymetrix probe sets: Gga.4878.1.S1_at (Chicken Array)   GgaAffx.12681.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000059710
Ensembl peptide - ENSGALP00000061201
Ensembl peptide - ENSGALP00000060852
Ensembl peptide - ENSGALP00000060208
Ensembl peptide - ENSGALP00000049473
Ensembl peptide - ENSGALP00000050852
Ensembl peptide - ENSGALP00000059333
NCBI entrez gene - 420182     See in Manteia.
RefSeq - NM_001006345
RefSeq - XM_015282779
RefSeq Peptide - NP_001006345
swissprot - A0A1D5PDK7
swissprot - A0A1L1RPY1
swissprot - Q5ZJ56
swissprot - A0A1L1RKQ5
Ensembl - ENSGALG00000035252
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpl7ENSDARG00000007320Danio rerio
 RPL7ENSG00000147604Homo sapiens
 Rpl7ENSMUSG00000043716Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RPL7L1 / 60S ribosomal protein L7-like 1 / Q6DKI1* / Q9D8M4* / ribosomal protein L7 like 1*ENSGALG0000001197452


Protein motifs (from Interpro)
Interpro ID Name
 IPR005998  Ribosomal protein L7, eukaryotic
 IPR012988  Ribosomal protein L30, N-terminal
 IPR016082  Ribosomal protein L30, ferredoxin-like fold domain
 IPR018038  Ribosomal protein L30, conserved site
 IPR024094  Cytochrome f large domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0042273 ribosomal large subunit biogenesis IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0005844 polysome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0003735 structural constituent of ribosome IBA
 molecular_functionGO:0042803 protein homodimerization activity IEA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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