ENSDARG00000043631


Danio rerio

Features
Gene ID: ENSDARG00000043631
  
Biological name :bcas2
  
Synonyms : bcas2 / BCAS2, pre-mRNA processing factor / Q5RKQ0
  
Possible biological names infered from orthology : breast carcinoma amplified sequence 2 / O75934 / Q9D287
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 11008763
Gene end: 11016766
  
Corresponding Affymetrix probe sets: Dr.4101.1.S1_at (Zebrafish Array)   NM_001007774_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000064065
NCBI entrez gene - 493614     See in Manteia.
RefSeq - NM_001007774
RefSeq Peptide - NP_001007775
swissprot - Q5RKQ0
ZFIN ID - ZDB-GENE-030408-5
Ensembl - ENSDARG00000043631
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BCAS2ENSGALG00000002002Gallus gallus
 BCAS2ENSG00000116752Homo sapiens
 Bcas2ENSMUSG00000005687Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008409  Pre-mRNA-splicing factor SPF27


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0000974 Prp19 complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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