ENSDARG00000045413


Danio rerio

Features
Gene ID: ENSDARG00000045413
  
Biological name :gcm2
  
Synonyms : gcm2 / glial cells missing homolog 2 (Drosophila)
  
Possible biological names infered from orthology : glial cells missing homolog 2 / O75603
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 8827603
Gene end: 8831912
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000066779
Ensembl peptide - ENSDARP00000113822
NCBI entrez gene - 449615     See in Manteia.
RefSeq - XM_005162569
RefSeq - NM_001005603
RefSeq Peptide - NP_001005603
swissprot - Q68BU9
swissprot - Q5TLZ9
ZFIN ID - ZDB-GENE-050127-1
Ensembl - ENSDARG00000045413
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GCM2ENSGALG00000012768Gallus gallus
 GCM2ENSG00000124827Homo sapiens
 Gcm2ENSMUSG00000021362Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003902  Transcription regulator GCM domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0009887 animal organ morphogenesis IMP
 biological_processGO:0009957 epidermal cell fate specification IMP
 biological_processGO:0042063 gliogenesis IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0051216 cartilage development IMP
 biological_processGO:0055074 calcium ion homeostasis IMP
 biological_processGO:0055078 sodium ion homeostasis IMP
 cellular_componentGO:0005634 nucleus IC
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000084 yolk yolk increased size , abnormal
Show

 ZFA:0000170 basibranchial basibranchial decreased size , abnormal
Show

 ZFA:0000217 inner ear inner ear decreased size , abnormal
Show

 ZFA:0000368 integument integument physical object quality , abnormal
Show

 ZFA:0001205 Meckel s cartilage Meckels cartilage mislocalised ventrally , abnormal
Show

 ZFA:0001273 ventral mandibular arch ventral mandibular arch exserted , abnormal
Show

 ZFA:0001399 palatoquadrate cartilage palatoquadrate cartilage malformed , abnormal
Show

 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage mislocalised ventrally , abnormal
Show

 ZFA:0001460 pharyngeal arch cartilage pharyngeal arch cartilage decreased size , abnormal
Show

 ZFA:0001516 ceratobranchial cartilage ceratobranchial cartilage decreased size , abnormal
Show

 ZFA:0001617 otolith otolith decreased size , abnormal
Show

 ZFA:0005325 integument ionocyte integument ionocyte decreased amount , abnormal
Show

 ZFA:0005327 vH ionocyte vH ionocyte decreased amount , abnormal
Show

 ZFA:0005579 NCC ionocyte NCC ionocyte increased amount , abnormal
Show

 ZFA:0009366 hair cell hair cell decreased amount , abnormal
Show

 ZFA:0009367 neuromast hair cell neuromast hair cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr