ENSDARG00000045638


Danio rerio

Features
Gene ID: ENSDARG00000045638
  
Biological name :slc13a1
  
Synonyms : slc13a1 / solute carrier family 13 member 1
  
Possible biological names infered from orthology : Q9BZW2 / Q9JHI4
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 27923846
Gene end: 27932723
  
Corresponding Affymetrix probe sets: Dr.12354.1.A1_at (Zebrafish Array)   NM_199281_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000047006
NCBI entrez gene - 387592     See in Manteia.
RefSeq - NM_199281
RefSeq Peptide - NP_954975
swissprot - Q6PE27
ZFIN ID - ZDB-GENE-031222-3
Ensembl - ENSDARG00000045638
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SLC13A1ENSGALG00000008874Gallus gallus
 Q9BZW2ENSG00000081800Homo sapiens
 Q9JHI4ENSMUSG00000029700Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
slc13a4 / solute carrier family 13 (sodium/sulfate symporter), member 4 / Q9UKG4* / solute carrier family 13 member 4*ENSDARG0000005905351
slc13a2 / solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 / Q13183* / solute carrier family 13 member 2*ENSDARG0000005385343
slc13a5b / solute carrier family 13 (sodium-dependent citrate transporter), member 5b / Q67BT3* / Q86YT5* / SLC13A5* / solute carrier family 13 member 5*ENSDARG0000003999943
slc13a5a / info solute carrier family 13 (sodium-dependent citrate transporter), member 5a / Q86YT5* / Q67BT3* / SLC13A5* / solute carrier family 13 member 5*ENSDARG0000007769142
slc13a3 / solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 / Q8WWT9* / Q91Y63* / solute carrier family 13 member 3*ENSDARG0000006947839


Protein motifs (from Interpro)
Interpro ID Name
 IPR001898  Solute carrier family 13


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006814 sodium ion transport IDA
 biological_processGO:0008272 sulfate transport IDA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:1902358 sulfate transmembrane transport IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005215 transporter activity IEA
 molecular_functionGO:0015382 sodium:sulfate symporter activity IDA


Pathways (from Reactome)
Pathway description
Sodium-coupled sulphate, di- and tri-carboxylate transporters


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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