ENSDARG00000045680


Danio rerio

Features
Gene ID: ENSDARG00000045680
  
Biological name :tnpo3
  
Synonyms : tnpo3 / transportin 3
  
Possible biological names infered from orthology : Mus musculus transportin 3 (Tnpo3), transcript variant 2, mRNA. / Q6P2B1 / Q9Y5L0
  
Species: Danio rerio
  
Chr. number: 4
Strand: 1
Band:
Gene start: 13586455
Gene end: 13605158
  
Corresponding Affymetrix probe sets: Dr.2195.1.S1_at (Zebrafish Array)   NM_201087_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000067160
Ensembl peptide - ENSDARP00000120894
Ensembl peptide - ENSDARP00000156422
NCBI entrez gene - 394062     See in Manteia.
RefSeq - NM_201087
RefSeq Peptide - NP_957381
swissprot - Q5RHV1
swissprot - Q7ZW13
ZFIN ID - ZDB-GENE-040426-708
Ensembl - ENSDARG00000045680
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TNPO3ENSGALG00000039420Gallus gallus
 TNPO3ENSG00000064419Homo sapiens
 Tnpo3ENSMUSG00000012535Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch73-182a11.2ENSDARG0000007699623
ipo13 / importin 13 / O94829*ENSDARG0000006061822


Protein motifs (from Interpro)
Interpro ID Name
 IPR011989  Armadillo-like helical
 IPR013598  Exportin-1/Importin-beta-like
 IPR016024  Armadillo-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IMP
 biological_processGO:0006606 protein import into nucleus IBA
 biological_processGO:0008380 RNA splicing IMP
 biological_processGO:0030217 T cell differentiation IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0031965 nuclear membrane IBA
 molecular_functionGO:0008139 nuclear localization sequence binding IBA
 molecular_functionGO:0008565 protein transporter activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001078 thymus thymus decreased amount , abnormal
thymus T cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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