ENSDARG00000045691


Danio rerio

Features
Gene ID: ENSDARG00000045691
  
Biological name :zcrb1
  
Synonyms : Q5SP50 / zcrb1 / zinc finger CCHC-type and RNA binding motif 1
  
Possible biological names infered from orthology : Q8TBF4 / Q9CZ96 / zinc finger CCHC-type and RNA binding motif containing 1
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 13923927
Gene end: 13931508
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000067173
Ensembl peptide - ENSDARP00000067171
NCBI entrez gene - 550251     See in Manteia.
RefSeq - NM_001017589
RefSeq Peptide - NP_001017589
swissprot - E7EYV7
swissprot - Q5SP50
ZFIN ID - ZDB-GENE-041210-114
Ensembl - ENSDARG00000045691
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZCRB1ENSGALG00000009544Gallus gallus
 ZCRB1ENSG00000139168Homo sapiens
 Zcrb1ENSMUSG00000022635Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR001878  Zinc finger, CCHC-type
 IPR034219  ZCRB1, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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