ENSG00000139168


Homo sapiens

Features
Gene ID: ENSG00000139168
  
Biological name :ZCRB1
  
Synonyms : Q8TBF4 / ZCRB1 / zinc finger CCHC-type and RNA binding motif containing 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: q12
Gene start: 42312078
Gene end: 42326118
  
Corresponding Affymetrix probe sets: 225394_s_at (Human Genome U133 Plus 2.0 Array)   227416_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000448780
Ensembl peptide - ENSP00000266529
Ensembl peptide - ENSP00000446732
NCBI entrez gene - 85437     See in Manteia.
OMIM - 610750
RefSeq - XM_017020124
RefSeq - NM_033114
RefSeq Peptide - NP_149105
swissprot - G3V1V1
swissprot - A0A024R106
swissprot - Q8TBF4
swissprot - F8VXY6
Ensembl - ENSG00000139168
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 zcrb1ENSDARG00000045691Danio rerio
 ZCRB1ENSGALG00000009544Gallus gallus
 Zcrb1ENSMUSG00000022635Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR001878  Zinc finger, CCHC-type
 IPR003954  RNA recognition motif domain, eukaryote
 IPR034219  ZCRB1, RNA recognition motif
 IPR035979  RNA-binding domain superfamily
 IPR036875  Zinc finger, CCHC-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IC
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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