ENSDARG00000051931


Danio rerio

Features
Gene ID: ENSDARG00000051931
  
Biological name :edc3
  
Synonyms : edc3 / enhancer of mRNA decapping 3 homolog (S. cerevisiae)
  
Possible biological names infered from orthology : enhancer of mRNA decapping 3 / Enhancer of mRNA-decapping protein 3 / Q8K2D3 / Q96F86
  
Species: Danio rerio
  
Chr. number: 25
Strand: -1
Band:
Gene start: 20668272
Gene end: 20691609
  
Corresponding Affymetrix probe sets: Dr.5350.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000067372
Ensembl peptide - ENSDARP00000155469
NCBI entrez gene - 504054     See in Manteia.
RefSeq - NM_001018126
RefSeq Peptide - NP_001018136
swissprot - F1QL27
ZFIN ID - ZDB-GENE-050522-287
Ensembl - ENSDARG00000051931
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EDC3ENSGALG00000040181Gallus gallus
 EDC3ENSG00000179151Homo sapiens
 Edc3ENSMUSG00000038957Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004443  YjeF N-terminal domain
 IPR019050  FDF domain
 IPR025609  Lsm14-like, N-terminal
 IPR025762  DFDF domain
 IPR034107  Lsm16, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA IEA
 molecular_functionGO:0003729 mRNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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