ENSMUSG00000038957


Mus musculus

Features
Gene ID: ENSMUSG00000038957
  
Biological name :Edc3
  
Synonyms : Edc3 / Enhancer of mRNA-decapping protein 3 / Q8K2D3
  
Possible biological names infered from orthology : enhancer of mRNA decapping 3 / Q96F86
  
Species: Mus musculus
  
Chr. number: 9
Strand: 1
Band: B
Gene start: 57708540
Gene end: 57752499
  
Corresponding Affymetrix probe sets: 10585759 (MoGene1.0st)   1433710_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000049146
Ensembl peptide - ENSMUSP00000123505
Ensembl peptide - ENSMUSP00000123317
NCBI entrez gene - 353190     See in Manteia.
MGI - MGI:2142951
RefSeq - XM_011242760
RefSeq - NM_153799
RefSeq - XM_006511247
RefSeq Peptide - NP_722494
swissprot - D6RCX6
swissprot - Q8K2D3
swissprot - A0ELI5
swissprot - D3YYS4
Ensembl - ENSMUSG00000038957
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 edc3ENSDARG00000051931Danio rerio
 EDC3ENSGALG00000040181Gallus gallus
 EDC3ENSG00000179151Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004443  YjeF N-terminal domain
 IPR019050  FDF domain
 IPR025609  Lsm14-like, N-terminal
 IPR025762  DFDF domain
 IPR034107  Lsm16, N-terminal
 IPR036652  YjeF N-terminal domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA IEA
 biological_processGO:0033962 cytoplasmic mRNA processing body assembly IBA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule ISO
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:1990174 phosphodiesterase decapping endonuclease activity ISO


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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