ENSDARG00000052480


Danio rerio

Features
Gene ID: ENSDARG00000052480
  
Biological name :pdcd11
  
Synonyms : pdcd11 / programmed cell death 11
  
Possible biological names infered from orthology : Q14690 / Q6NS46
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 49435017
Gene end: 49481173
  
Corresponding Affymetrix probe sets: Dr.13356.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000112333
NCBI entrez gene - 794079     See in Manteia.
RefSeq - NM_001089368
RefSeq - XM_005160117
RefSeq Peptide - NP_001082837
swissprot - B8JIP9
ZFIN ID - ZDB-GENE-030131-4076
Ensembl - ENSDARG00000052480
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000008265Gallus gallus
 PDCD11ENSG00000148843Homo sapiens
 Pdcd11ENSMUSG00000025047Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003029  S1 domain
 IPR003107  HAT (Half-A-TPR) repeat
 IPR008847  Suppressor of forked
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR012340  Nucleic acid-binding, OB-fold
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR022967  RNA-binding domain, S1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0032040 small-subunit processome IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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