ENSMUSG00000025047


Mus musculus

Features
Gene ID: ENSMUSG00000025047
  
Biological name :Pdcd11
  
Synonyms : Pdcd11 / programmed cell death 11 / Q6NS46
  
Possible biological names infered from orthology : Q14690
  
Species: Mus musculus
  
Chr. number: 19
Strand: 1
Band: C3
Gene start: 47090766
Gene end: 47131143
  
Corresponding Affymetrix probe sets: 10463751 (MoGene1.0st)   1428688_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000072008
NCBI entrez gene - 18572     See in Manteia.
MGI - MGI:1341788
RefSeq - NM_011053
RefSeq - XM_011247165
RefSeq Peptide - NP_035183
swissprot - Q6NS46
Ensembl - ENSMUSG00000025047
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pdcd11ENSDARG00000052480Danio rerio
 ENSGALG00000008265Gallus gallus
 PDCD11ENSG00000148843Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003029  S1 domain
 IPR003107  HAT (Half-A-TPR) repeat
 IPR008847  Suppressor of forked
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR012340  Nucleic acid-binding, OB-fold
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR022967  RNA-binding domain, S1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0032040 small-subunit processome IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008134 transcription factor binding IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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