ENSDARG00000052617


Danio rerio

Features
Gene ID: ENSDARG00000052617
  
Biological name :raver1
  
Synonyms : raver1 / ribonucleoprotein, PTB-binding 1
  
Possible biological names infered from orthology : AC011511.4 / Q8IY67 / Q9CW46
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 46559639
Gene end: 46587006
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000125832
Ensembl peptide - ENSDARP00000109981
Ensembl peptide - ENSDARP00000123654
NCBI entrez gene - 553693     See in Manteia.
RefSeq - NM_001020667
RefSeq - NM_001309640
RefSeq Peptide - NP_001018503
RefSeq Peptide - NP_001296569
swissprot - I3ISF5
swissprot - E7FAA3
swissprot - F1Q561
ZFIN ID - ZDB-GENE-050522-99
Ensembl - ENSDARG00000052617
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 AC011511.4ENSG00000267303Homo sapiens
 Q8IY67ENSG00000161847Homo sapiens
 Q9CW46ENSMUSG00000010205Mus musculus
 Q9CW46ENSMUSG00000111497Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
raver2 / ribonucleoprotein, PTB-binding 2 / Q7TPD6* / Q9HCJ3*ENSDARG0000007503438


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034633  Ribonucleoprotein PTB-binding 1, RNA recognition motif 1
 IPR034635  Ribonucleoprotein PTB-binding 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003676 nucleic acid binding IBA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr