ENSDARG00000053918


Danio rerio

Features
Gene ID: ENSDARG00000053918
  
Biological name :srfa
  
Synonyms : serum response factor a / srfa
  
Possible biological names infered from orthology : P11831 / Q9JM73 / serum response factor / SRF
  
Species: Danio rerio
  
Chr. number: 22
Strand: 1
Band:
Gene start: 35089031
Gene end: 35124655
  
Corresponding Affymetrix probe sets: Dr.8167.1.S1_a_at (Zebrafish Array)   Dr.8167.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000070519
NCBI entrez gene - 30431     See in Manteia.
RefSeq - NM_001110526
RefSeq Peptide - NP_001103996
swissprot - A8HAM3
ZFIN ID - ZDB-GENE-990714-29
Ensembl - ENSDARG00000053918
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SRFENSGALG00000032029Gallus gallus
 SRFENSG00000112658Homo sapiens
 SrfENSMUSG00000015605Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
srfb / serum response factor b / SRF* / P11831* / serum response factor*ENSDARG0000010286730


Protein motifs (from Interpro)
Interpro ID Name
 IPR002100  Transcription factor, MADS-box
 IPR033897  MADS SRF-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IDA
 molecular_functionGO:0000982 transcription factor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000987 proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
RHO GTPases Activate Formins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000060865 scai / suppressor of cancer cell invasion / Q8C8N2* / Q8N9R8* / Protein SCAI *  / complex / reaction






 

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