ENSGALG00000032029


Gallus gallus

Features
Gene ID: ENSGALG00000032029
  
Biological name :SRF
  
Synonyms : serum response factor / SRF
  
Possible biological names infered from orthology : P11831 / Q9JM73
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 4427436
Gene end: 4436079
  
Corresponding Affymetrix probe sets: Gga.2013.2.A1_at (Chicken Array)   Gga.2013.2.S1_a_at (Chicken Array)   Gga.9177.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000054596
NCBI entrez gene - 396103     See in Manteia.
RefSeq - NM_001252141
RefSeq Peptide - NP_001239070
swissprot - A0A1D5PP00
Ensembl - ENSGALG00000032029
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 srfaENSDARG00000053918Danio rerio
 srfbENSDARG00000102867Danio rerio
 SRFENSG00000112658Homo sapiens
 SrfENSMUSG00000015605Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002100  Transcription factor, MADS-box


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001569 branching involved in blood vessel morphogenesis IEA
 biological_processGO:0001666 response to hypoxia IEA
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0001707 mesoderm formation IEA
 biological_processGO:0001764 neuron migration IEA
 biological_processGO:0001829 trophectodermal cell differentiation IEA
 biological_processGO:0001947 heart looping IEA
 biological_processGO:0002011 morphogenesis of an epithelial sheet IEA
 biological_processGO:0002042 cell migration involved in sprouting angiogenesis IEA
 biological_processGO:0002521 leukocyte differentiation IEA
 biological_processGO:0003257 positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007015 actin filament organization IEA
 biological_processGO:0007160 cell-matrix adhesion IEA
 biological_processGO:0007369 gastrulation IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0008306 associative learning IEA
 biological_processGO:0009725 response to hormone IEA
 biological_processGO:0010669 epithelial structure maintenance IEA
 biological_processGO:0010735 positive regulation of transcription via serum response element binding IEA
 biological_processGO:0021766 hippocampus development IEA
 biological_processGO:0022028 tangential migration from the subventricular zone to the olfactory bulb IEA
 biological_processGO:0030036 actin cytoskeleton organization IEA
 biological_processGO:0030038 contractile actin filament bundle assembly IEA
 biological_processGO:0030155 regulation of cell adhesion IEA
 biological_processGO:0030168 platelet activation IEA
 biological_processGO:0030220 platelet formation IEA
 biological_processGO:0030878 thyroid gland development IEA
 biological_processGO:0030900 forebrain development IEA
 biological_processGO:0031175 neuron projection development IEA
 biological_processGO:0033561 regulation of water loss via skin IEA
 biological_processGO:0034097 response to cytokine IEA
 biological_processGO:0035855 megakaryocyte development IEA
 biological_processGO:0035912 dorsal aorta morphogenesis IEA
 biological_processGO:0042789 mRNA transcription by RNA polymerase II IEA
 biological_processGO:0043149 stress fiber assembly IEA
 biological_processGO:0043589 skin morphogenesis IEA
 biological_processGO:0045059 positive thymic T cell selection IEA
 biological_processGO:0045214 sarcomere organization IEA
 biological_processGO:0045597 positive regulation of cell differentiation IEA
 biological_processGO:0045773 positive regulation of axon extension IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0045987 positive regulation of smooth muscle contraction IEA
 biological_processGO:0046716 muscle cell cellular homeostasis IEA
 biological_processGO:0048538 thymus development IEA
 biological_processGO:0048589 developmental growth IEA
 biological_processGO:0048821 erythrocyte development IEA
 biological_processGO:0051091 positive regulation of DNA-binding transcription factor activity IEA
 biological_processGO:0051491 positive regulation of filopodium assembly IEA
 biological_processGO:0055003 cardiac myofibril assembly IEA
 biological_processGO:0060218 hematopoietic stem cell differentiation IEA
 biological_processGO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter IEA
 biological_processGO:0060292 long term synaptic depression IEA
 biological_processGO:0060324 face development IEA
 biological_processGO:0060347 heart trabecula formation IEA
 biological_processGO:0060425 lung morphogenesis IEA
 biological_processGO:0060532 bronchus cartilage development IEA
 biological_processGO:0060534 trachea cartilage development IEA
 biological_processGO:0060947 cardiac vascular smooth muscle cell differentiation IEA
 biological_processGO:0061029 eyelid development in camera-type eye IEA
 biological_processGO:0061145 lung smooth muscle development IEA
 biological_processGO:0070830 bicellular tight junction assembly IEA
 biological_processGO:0090009 primitive streak formation IEA
 biological_processGO:0090136 epithelial cell-cell adhesion IEA
 biological_processGO:0090398 cellular senescence IEA
 biological_processGO:0098609 cell-cell adhesion IEA
 biological_processGO:1900222 negative regulation of amyloid-beta clearance IEA
 biological_processGO:1902894 negative regulation of pri-miRNA transcription by RNA polymerase II IEA
 biological_processGO:1902895 positive regulation of pri-miRNA transcription by RNA polymerase II IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000982 transcription factor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000983 transcription factor activity, RNA polymerase II core promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000987 proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001076 transcription factor activity, RNA polymerase II transcription factor binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0010736 serum response element binding IEA
 molecular_functionGO:0031490 chromatin DNA binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA
 molecular_functionGO:0070878 primary miRNA binding IEA


Pathways (from Reactome)
Pathway description
RHO GTPases Activate Formins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr