ENSDARG00000054154


Danio rerio

Features
Gene ID: ENSDARG00000054154
  
Biological name :bms1
  
Synonyms : bms1 / BMS1 ribosome biogenesis factor
  
Possible biological names infered from orthology : Q14692
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 29240124
Gene end: 29270362
  
Corresponding Affymetrix probe sets: Dr.5508.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000053760
Ensembl peptide - ENSDARP00000104852
NCBI entrez gene - 553241     See in Manteia.
swissprot - E7EXI9
swissprot - E7F349
ZFIN ID - ZDB-GENE-060720-2
Ensembl - ENSDARG00000054154
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BMS1ENSGALG00000002624Gallus gallus
 BMS1ENSG00000165733Homo sapiens
 Bms1ENSMUSG00000030138Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007034  Ribosome biogenesis protein BMS1/TSR1, C-terminal
 IPR012948  AARP2CN
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR030387  Bms1/Tsr1-type G domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0001889 liver development IMP
 biological_processGO:0006364 rRNA processing IMP
 biological_processGO:0031016 pancreas development IMP
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0030686 90S preribosome IBA
 molecular_functionGO:0003924 GTPase activity IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005525 GTP binding IBA
 molecular_functionGO:0034511 U3 snoRNA binding IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000037 anatomical structure anatomical structure decreased amount , abnormal
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 ZFA:0000123 liver liver decreased size , abnormal
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 ZFA:0000140 pancreas pancreas decreased size , abnormal
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 ZFA:0001249 exocrine pancreas exocrine pancreas decreased size , abnormal
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 ZFA:0001338 intestine intestine morphology , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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