ENSMUSG00000030138


Mus musculus

Features
Gene ID: ENSMUSG00000030138
  
Biological name :Bms1
  
Synonyms : Bms1 / BMS1, ribosome biogenesis factor
  
Possible biological names infered from orthology : Q14692
  
Species: Mus musculus
  
Chr. number: 6
Strand: -1
Band: F1
Gene start: 118383381
Gene end: 118419474
  
Corresponding Affymetrix probe sets: 10547251 (MoGene1.0st)   1433636_at (Mouse Genome 430 2.0 Array)   1447679_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000032237
NCBI entrez gene - 213895     See in Manteia.
MGI - MGI:2446132
RefSeq - NM_194339
RefSeq - XM_017321497
RefSeq Peptide - NP_919320
swissprot - Q6PGF5
Ensembl - ENSMUSG00000030138
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 bms1ENSDARG00000054154Danio rerio
 BMS1ENSGALG00000002624Gallus gallus
 BMS1ENSG00000165733Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007034  Ribosome biogenesis protein BMS1/TSR1, C-terminal
 IPR012948  AARP2CN
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR030387  Bms1/Tsr1-type G domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0030686 90S preribosome IBA
 molecular_functionGO:0003924 GTPase activity IBA
 molecular_functionGO:0005525 GTP binding IBA
 molecular_functionGO:0034511 U3 snoRNA binding IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001303 abnormal lens morphology "malformed transparent structure of the eye responsible for focusing light rays" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:40203]
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Allelic Composition: Bex2tm1b(EUCOMM)Hmgu/Bex2tm1b(EUCOMM)Hmgu
Genetic Background: C57BL/6N-Bex2tm1b(EUCOMM)Hmgu/Ieg

 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
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Allelic Composition: Bex2tm1b(EUCOMM)Hmgu/Bex2tm1b(EUCOMM)Hmgu
Genetic Background: C57BL/6N-Bex2tm1b(EUCOMM)Hmgu/Ieg

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000024785 Rcl1 / Q9JJT0 / RNA 3-terminal phosphate cyclase-like protein / Q9Y2P8* / RNA terminal phosphate cyclase like 1*  / complex






 

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