ENSMUSG00000024785


Mus musculus

Features
Gene ID: ENSMUSG00000024785
  
Biological name :Rcl1
  
Synonyms : Q9JJT0 / Rcl1 / RNA 3-terminal phosphate cyclase-like protein
  
Possible biological names infered from orthology : Q9Y2P8 / RNA terminal phosphate cyclase like 1
  
Species: Mus musculus
  
Chr. number: 19
Strand: 1
Band: C1
Gene start: 29101375
Gene end: 29143843
  
Corresponding Affymetrix probe sets: 10462346 (MoGene1.0st)   1416730_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000067579
NCBI entrez gene - 59028     See in Manteia.
MGI - MGI:1913275
RefSeq - NM_021525
RefSeq Peptide - NP_067500
swissprot - Q9JJT0
Ensembl - ENSMUSG00000024785
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rcl1ENSDARG00000038312Danio rerio
 RCL1ENSGALG00000015024Gallus gallus
 RCL1ENSG00000120158Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Rtca / Q9D7H3 / RNA 3-terminal phosphate cyclase / O00442*ENSMUSG0000000033922


Protein motifs (from Interpro)
Interpro ID Name
 IPR000228  RNA 3"-terminal phosphate cyclase
 IPR013791  RNA 3"-terminal phosphate cyclase, insert domain
 IPR013792  RNA 3"-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
 IPR016443  RNA 3"-terminal phosphate cyclase type 2
 IPR020719  RNA 3"-terminal phosphate cyclase-like, conserved site
 IPR023797  RNA 3"-terminal phosphate cyclase domain
 IPR037136  RNA 3"-terminal phosphate cyclase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IMP
 biological_processGO:0000480 endonucleolytic cleavage in 5"-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IMP
 biological_processGO:0006364 rRNA processing ISA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IDA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004521 endoribonuclease activity IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000030138 Bms1 / BMS1, ribosome biogenesis factor / Q14692*  / complex






 

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