ENSMUSG00000000339


Mus musculus

Features
Gene ID: ENSMUSG00000000339
  
Biological name :Rtca
  
Synonyms : Q9D7H3 / RNA 3-terminal phosphate cyclase / Rtca
  
Possible biological names infered from orthology : O00442
  
Species: Mus musculus
  
Chr. number: 3
Strand: -1
Band: G1
Gene start: 116488963
Gene end: 116508208
  
Corresponding Affymetrix probe sets: 10501649 (MoGene1.0st)   1424095_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000000348
Ensembl peptide - ENSMUSP00000121357
Ensembl peptide - ENSMUSP00000119463
Ensembl peptide - ENSMUSP00000117610
NCBI entrez gene - 66368     See in Manteia.
MGI - MGI:1913618
RefSeq - XM_006501884
RefSeq - NM_025517
RefSeq - XM_006501883
RefSeq Peptide - NP_079793
swissprot - D6REI7
swissprot - Q9D7H3
swissprot - D3Z263
swissprot - D6RD00
Ensembl - ENSMUSG00000000339
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rtcaENSDARG00000002215Danio rerio
 ENSGALG00000005277Gallus gallus
 ENSGALG00000045129Gallus gallus
 RTCAENSG00000137996Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Rcl1 / Q9JJT0 / RNA 3-terminal phosphate cyclase-like protein / Q9Y2P8* / RNA terminal phosphate cyclase like 1*ENSMUSG0000002478522


Protein motifs (from Interpro)
Interpro ID Name
 IPR000228  RNA 3"-terminal phosphate cyclase
 IPR013791  RNA 3"-terminal phosphate cyclase, insert domain
 IPR013792  RNA 3"-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
 IPR017770  RNA 3"-terminal phosphate cyclase type 1
 IPR020719  RNA 3"-terminal phosphate cyclase-like, conserved site
 IPR023797  RNA 3"-terminal phosphate cyclase domain
 IPR036553  RNA 3"-terminal phosphate cyclase, insert domain superfamily
 IPR037136  RNA 3"-terminal phosphate cyclase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0003963 RNA-3"-phosphate cyclase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016874 ligase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0011101 partial prenatal lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms between fertilization and birth (Mus: approximately E18.5)" [MGI:csmith]
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Allelic Composition: Prmt8tm1d(EUCOMM)Wtsi/Prmt8+
Genetic Background: involves: C57BL/6N

 MP:0030013 improved central nervous system regeneration "faster or more complete regeneration of healthy central nervous system tissue following injury or disease" [] {comment="MGI:anna"}
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Allelic Composition: Prmt8tm1d(EUCOMM)Wtsi/Prmt8+
Genetic Background: involves: C57BL/6N

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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