ENSG00000137996


Homo sapiens

Features
Gene ID: ENSG00000137996
  
Biological name :RTCA
  
Synonyms : O00442 / RNA 3-terminal phosphate cyclase / RTCA
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p21.2
Gene start: 100266207
Gene end: 100292769
  
Corresponding Affymetrix probe sets: 203594_at (Human Genome U133 Plus 2.0 Array)   238087_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000359146
Ensembl peptide - ENSP00000260563
Ensembl peptide - ENSP00000359144
NCBI entrez gene - 8634     See in Manteia.
OMIM - 611286
RefSeq - XM_017002669
RefSeq - NM_001130841
RefSeq - NM_003729
RefSeq - XM_005271298
RefSeq - XM_005271299
RefSeq Peptide - NP_001124313
RefSeq Peptide - NP_003720
swissprot - O00442
swissprot - A6NIC1
Ensembl - ENSG00000137996
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rtcaENSDARG00000002215Danio rerio
 ENSGALG00000005277Gallus gallus
 ENSGALG00000045129Gallus gallus
 RtcaENSMUSG00000000339Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RCL1 / Q9Y2P8 / RNA terminal phosphate cyclase like 1ENSG0000012015822


Protein motifs (from Interpro)
Interpro ID Name
 IPR000228  RNA 3"-terminal phosphate cyclase
 IPR013791  RNA 3"-terminal phosphate cyclase, insert domain
 IPR013792  RNA 3"-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
 IPR017770  RNA 3"-terminal phosphate cyclase type 1
 IPR020719  RNA 3"-terminal phosphate cyclase-like, conserved site
 IPR023797  RNA 3"-terminal phosphate cyclase domain
 IPR036553  RNA 3"-terminal phosphate cyclase, insert domain superfamily
 IPR037136  RNA 3"-terminal phosphate cyclase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm TAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003723 RNA binding TAS
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0003963 RNA-3"-phosphate cyclase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016874 ligase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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