ENSDARG00000002215


Danio rerio

Features
Gene ID: ENSDARG00000002215
  
Biological name :rtca
  
Synonyms : RNA 3-terminal phosphate cyclase / rtca
  
Possible biological names infered from orthology : O00442 / Q9D7H3
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 16282144
Gene end: 16291041
  
Corresponding Affymetrix probe sets: Dr.1241.1.S1_at (Zebrafish Array)   NM_199536_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000023892
NCBI entrez gene - 321129     See in Manteia.
RefSeq - NM_199536
RefSeq Peptide - NP_955830
swissprot - Q7ZUX5
ZFIN ID - ZDB-GENE-030131-9687
Ensembl - ENSDARG00000002215
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000005277Gallus gallus
 ENSGALG00000045129Gallus gallus
 RTCAENSG00000137996Homo sapiens
 RtcaENSMUSG00000000339Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rcl1 / RNA terminal phosphate cyclase-like 1 / Q9Y2P8*ENSDARG0000003831223


Protein motifs (from Interpro)
Interpro ID Name
 IPR000228  RNA 3"-terminal phosphate cyclase
 IPR013791  RNA 3"-terminal phosphate cyclase, insert domain
 IPR013792  RNA 3"-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
 IPR017770  RNA 3"-terminal phosphate cyclase type 1
 IPR020719  RNA 3"-terminal phosphate cyclase-like, conserved site
 IPR023797  RNA 3"-terminal phosphate cyclase domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0003963 RNA-3"-phosphate cyclase activity IBA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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