ENSDARG00000038312


Danio rerio

Features
Gene ID: ENSDARG00000038312
  
Biological name :rcl1
  
Synonyms : rcl1 / RNA terminal phosphate cyclase-like 1
  
Possible biological names infered from orthology : Q9JJT0 / Q9Y2P8 / RNA 3-terminal phosphate cyclase-like protein
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 1833741
Gene end: 1869982
  
Corresponding Affymetrix probe sets: Dr.6949.1.A1_at (Zebrafish Array)   Dr.6949.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000055877
swissprot - F1RAI8
ZFIN ID - ZDB-GENE-040930-11
Ensembl - ENSDARG00000038312
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RCL1ENSGALG00000015024Gallus gallus
 RCL1ENSG00000120158Homo sapiens
 Rcl1ENSMUSG00000024785Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rtca / RNA 3-terminal phosphate cyclase / O00442*ENSDARG0000000221523


Protein motifs (from Interpro)
Interpro ID Name
 IPR000228  RNA 3"-terminal phosphate cyclase
 IPR013791  RNA 3"-terminal phosphate cyclase, insert domain
 IPR013792  RNA 3"-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
 IPR016443  RNA 3"-terminal phosphate cyclase type 2
 IPR020719  RNA 3"-terminal phosphate cyclase-like, conserved site
 IPR023797  RNA 3"-terminal phosphate cyclase domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004521 endoribonuclease activity IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
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 ZFA:0000114 heart heart quality , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
liver quality , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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