ENSGALG00000015024


Gallus gallus

Features
Gene ID: ENSGALG00000015024
  
Biological name :RCL1
  
Synonyms : RCL1 / RNA terminal phosphate cyclase like 1
  
Possible biological names infered from orthology : Q9JJT0 / Q9Y2P8 / RNA 3-terminal phosphate cyclase-like protein
  
Species: Gallus gallus
  
Chr. number: Z
Strand: 1
Band:
Gene start: 27481273
Gene end: 27515186
  
Corresponding Affymetrix probe sets: Gga.9558.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000024184
NCBI entrez gene - 427222     See in Manteia.
RefSeq - XM_015280188
RefSeq - XM_424808
swissprot - E1C1K6
Ensembl - ENSGALG00000015024
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rcl1ENSDARG00000038312Danio rerio
 RCL1ENSG00000120158Homo sapiens
 Rcl1ENSMUSG00000024785Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RTCA* / O00442* / Q9D7H3* / RNA 3-terminal phosphate cyclase*ENSGALG000000052777
RTCA* / O00442* / Q9D7H3* / RNA 3-terminal phosphate cyclase*ENSGALG000000451296


Protein motifs (from Interpro)
Interpro ID Name
 IPR000228  RNA 3"-terminal phosphate cyclase
 IPR013791  RNA 3"-terminal phosphate cyclase, insert domain
 IPR013792  RNA 3"-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
 IPR016443  RNA 3"-terminal phosphate cyclase type 2
 IPR020719  RNA 3"-terminal phosphate cyclase-like, conserved site
 IPR023797  RNA 3"-terminal phosphate cyclase domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
 biological_processGO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000480 endonucleolytic cleavage in 5"-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005730 nucleolus IBA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004521 endoribonuclease activity IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000002624 BMS1 / ribosome biogenesis protein BMS1 homolog / Q14692* / BMS1, ribosome biogenesis factor*  / complex






 

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