ENSDARG00000054307


Danio rerio

Features
Gene ID: ENSDARG00000054307
  
Biological name :zgc:77151
  
Synonyms : zgc:77151
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 36985209
Gene end: 37027252
  
Corresponding Affymetrix probe sets: Dr.11490.1.A1_at (Zebrafish Array)   NM_205565_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000070955
NCBI entrez gene - 337153     See in Manteia.
RefSeq - NM_205565
RefSeq Peptide - NP_991128
swissprot - F1QZ36
ZFIN ID - ZDB-GENE-030131-9097
Ensembl - ENSDARG00000054307
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
E7F888 / arid5b / AT-rich interaction domain 5B / Q8BM75* / Q14865* / AT-rich interactive domain-containing protein 5B *ENSDARG0000003719620
arid6 / AT-rich interaction domain 6ENSDARG0000006998812
arid5a / AT rich interactive domain 5A (MRF1-like) / Q03989* / AT-rich interaction domain 5A*ENSDARG0000007712011
arid4a / AT rich interactive domain 4A (RBP1-like) / P29374* / AT-rich interaction domain 4A*ENSDARG0000004387310
tomm20a / translocase of outer mitochondrial membrane 20 / Q4LE39* / ARID4B* / A2CG63* / AT-rich interaction domain 4B* / AT-rich interactive domain-containing protein 4B *ENSDARG0000009065610


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR030408  AT-rich interactive domain-containing protein 5B


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr