ENSDARG00000077120


Danio rerio

Features
Gene ID: ENSDARG00000077120
  
Biological name :arid5a
  
Synonyms : arid5a / AT rich interactive domain 5A (MRF1-like)
  
Possible biological names infered from orthology : AT-rich interaction domain 5A / AT-rich interactive domain-containing protein 5A / Q03989 / Q3U108
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 52377516
Gene end: 52403265
  
Corresponding Affymetrix probe sets: Dr.16304.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000102999
NCBI entrez gene - 100462698     See in Manteia.
RefSeq - NM_001327774
RefSeq Peptide - NP_001314703
swissprot - F1QHS9
ZFIN ID - ZDB-GENE-100525-3
Ensembl - ENSDARG00000077120
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ARID5AENSGALG00000039206Gallus gallus
 ARID5AENSG00000196843Homo sapiens
 Arid5aENSMUSG00000037447Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
E7F888 / arid5b / AT-rich interaction domain 5B / Q8BM75* / Q14865* / AT-rich interactive domain-containing protein 5B *ENSDARG0000003719630
arid6 / AT-rich interaction domain 6ENSDARG0000006998819
zgc:77151ENSDARG0000005430716
tomm20a / translocase of outer mitochondrial membrane 20 / Q4LE39* / ARID4B* / A2CG63* / AT-rich interaction domain 4B* / AT-rich interactive domain-containing protein 4B *ENSDARG0000009065613
arid4a / AT rich interactive domain 4A (RBP1-like) / P29374* / AT-rich interaction domain 4A*ENSDARG0000004387311


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR030408  AT-rich interactive domain-containing protein 5B


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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