ENSDARG00000090656


Danio rerio

Features
Gene ID: ENSDARG00000090656
  
Biological name :tomm20a
  
Synonyms : tomm20a / translocase of outer mitochondrial membrane 20
  
Possible biological names infered from orthology : A2CG63 / ARID4B / AT-rich interaction domain 4B / AT-rich interactive domain-containing protein 4B / Q4LE39
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 49597258
Gene end: 49707885
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000112863
Ensembl peptide - ENSDARP00000107839
Ensembl peptide - ENSDARP00000157304
NCBI entrez gene - 100537923     See in Manteia.
swissprot - B8JMI8
swissprot - F1R2N8
ZFIN ID - ZDB-GENE-040426-1976
Ensembl - ENSDARG00000090656
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ARID4BENSGALG00000034003Gallus gallus
 ARID4BENSG00000054267Homo sapiens
 A2CG63ENSMUSG00000039219Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
arid4a / AT rich interactive domain 4A (RBP1-like) / P29374* / AT-rich interaction domain 4A*ENSDARG0000004387330
E7F888 / arid5b / AT-rich interaction domain 5B / Q8BM75* / Q14865* / AT-rich interactive domain-containing protein 5B *ENSDARG0000003719610
zgc:77151ENSDARG000000543077
arid5a / AT rich interactive domain 5A (MRF1-like) / Q03989* / AT-rich interaction domain 5A*ENSDARG000000771206
arid6 / AT-rich interaction domain 6ENSDARG000000699886


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR002999  Tudor domain
 IPR012603  RBB1NT
 IPR016197  Chromo-like domain superfamily
 IPR025995  RNA binding activity-knot of a chromodomain
 IPR028853  AT-rich interactive domain-containing protein 4B


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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