ENSGALG00000034003


Gallus gallus

Features
Gene ID: ENSGALG00000034003
  
Biological name :ARID4B
  
Synonyms : ARID4B / AT-rich interaction domain 4B
  
Possible biological names infered from orthology : A2CG63 / AT-rich interactive domain-containing protein 4B / Q4LE39
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 38241567
Gene end: 38329305
  
Corresponding Affymetrix probe sets: Gga.14844.1.S1_at (Chicken Array)   GgaAffx.176.1.S1_at (Chicken Array)   GgaAffx.21117.1.S1_s_at (Chicken Array)   GgaAffx.26.1.S1_at (Chicken Array)   GgaAffx.3889.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044059
Ensembl peptide - ENSGALP00000064603
Ensembl peptide - ENSGALP00000054948
NCBI entrez gene - 425840     See in Manteia.
RefSeq - XM_003640986
RefSeq - XM_004935477
RefSeq - XM_004935478
swissprot - A0A1L1S0E5
swissprot - A0A1D5PPZ1
swissprot - A0A1D5NUP1
Ensembl - ENSGALG00000034003
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tomm20aENSDARG00000090656Danio rerio
 ARID4BENSG00000054267Homo sapiens
 A2CG63ENSMUSG00000039219Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ARID4A / AT-rich interactive domain-containing protein 4A / P29374* / AT-rich interaction domain 4A* / AT rich interactive domain 4A (RBP1-like)*ENSGALG0000001203743
ARID5B / AT-rich interactive domain-containing protein 5B / Q14865* / Q8BM75* / AT-rich interaction domain 5B*ENSGALG0000003153412
ARID5A / AT-rich interaction domain 5A / Q03989* / Q3U108* / AT-rich interactive domain-containing protein 5A *ENSGALG000000392066


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR002999  Tudor domain
 IPR012603  RBB1NT
 IPR016197  Chromo-like domain superfamily
 IPR025995  RNA binding activity-knot of a chromodomain
 IPR028853  AT-rich interactive domain-containing protein 4B


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006349 regulation of gene expression by genetic imprinting IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0034773 histone H4-K20 trimethylation IEA
 biological_processGO:0036124 histone H3-K9 trimethylation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0097368 establishment of Sertoli cell barrier IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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