ENSGALG00000012037


Gallus gallus

Features
Gene ID: ENSGALG00000012037
  
Biological name :ARID4A
  
Synonyms : ARID4A / AT-rich interactive domain-containing protein 4A
  
Possible biological names infered from orthology : AT-rich interaction domain 4A / AT rich interactive domain 4A (RBP1-like) / P29374
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 55351968
Gene end: 55395918
  
Corresponding Affymetrix probe sets: Gga.14966.1.S1_at (Chicken Array)   Gga.16073.1.S1_s_at (Chicken Array)   Gga.18887.1.S1_s_at (Chicken Array)   GgaAffx.12811.1.S1_at (Chicken Array)   GgaAffx.7635.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000049153
Ensembl peptide - ENSGALP00000053072
Ensembl peptide - ENSGALP00000000021
NCBI entrez gene - 423541     See in Manteia.
RefSeq - XM_015287509
RefSeq - NM_001012902
RefSeq - XM_015287507
RefSeq - XM_015287508
RefSeq Peptide - NP_001012920
swissprot - A0A1D5PJS6
swissprot - F1NPA3
swissprot - A0A1D5P8V4
Ensembl - ENSGALG00000012037
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 arid4aENSDARG00000043873Danio rerio
 ARID4AENSG00000032219Homo sapiens
 Arid4aENSMUSG00000048118Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ARID4B / AT-rich interaction domain 4B / A2CG63* / Q4LE39* / AT-rich interactive domain-containing protein 4B *ENSGALG0000003400344
ARID5B / AT-rich interactive domain-containing protein 5B / Q14865* / Q8BM75* / AT-rich interaction domain 5B*ENSGALG0000003153411
ARID5A / AT-rich interaction domain 5A / Q03989* / Q3U108* / AT-rich interactive domain-containing protein 5A *ENSGALG000000392065


Protein motifs (from Interpro)
Interpro ID Name
 IPR000953  Chromo/chromo shadow domain
 IPR001606  ARID DNA-binding domain
 IPR002999  Tudor domain
 IPR012603  RBB1NT
 IPR016197  Chromo-like domain superfamily
 IPR025995  RNA binding activity-knot of a chromodomain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006349 regulation of gene expression by genetic imprinting IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0034773 histone H4-K20 trimethylation IEA
 biological_processGO:0036124 histone H3-K9 trimethylation IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048821 erythrocyte development IEA
 biological_processGO:0080182 histone H3-K4 trimethylation IEA
 biological_processGO:0097368 establishment of Sertoli cell barrier IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0017053 transcriptional repressor complex IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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