ENSDARG00000055113


Danio rerio

Features
Gene ID: ENSDARG00000055113
  
Biological name :pom121
  
Synonyms : pom121 / POM121 transmembrane nucleoporin
  
Possible biological names infered from orthology : nuclear pore membrane protein 121 / POM121C / POM121L12 / POM121L2 / POM121 membrane glycoprotein-like 2 (rat) / POM121 transmembrane nucleoporin C / POM121 transmembrane nucleoporin like 12 / POM121 transmembrane nucleoporin like 2 / Q5SW25 / Q8K3Z9 / Q8N7R1 / Q96HA1 / Q96KW2
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 35169644
Gene end: 35186310
  
Corresponding Affymetrix probe sets: Dr.6372.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000071893
Ensembl peptide - ENSDARP00000107396
NCBI entrez gene - 568298     See in Manteia.
swissprot - F1Q7D4
swissprot - F1R543
ZFIN ID - ZDB-GENE-030131-6557
Ensembl - ENSDARG00000055113
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000029674Gallus gallus
 POM121ENSG00000196313Homo sapiens
 POM121CENSG00000272391Homo sapiens
 Q8N7R1ENSG00000221900Homo sapiens
 Q96KW2ENSG00000158553Homo sapiens
 Pom121ENSMUSG00000053293Mus musculus
 Pom121l12ENSMUSG00000084135Mus musculus
 Q5SW25ENSMUSG00000016982Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR026054  Nuclear pore complex protein
 IPR026090  Nuclear pore protein POM121


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006405 RNA export from nucleus IBA
 biological_processGO:0006606 protein import into nucleus IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0008139 nuclear localization sequence binding IBA
 molecular_functionGO:0017056 structural constituent of nuclear pore IBA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
Regulation of Glucokinase by Glucokinase Regulatory Protein
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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