ENSDARG00000055969


Danio rerio

Features
Gene ID: ENSDARG00000055969
  
Biological name :rfc3
  
Synonyms : replication factor C (activator 1) 3 / rfc3
  
Possible biological names infered from orthology : P40938 / Q8R323 / replication factor C subunit 3
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 34021368
Gene end: 34033680
  
Corresponding Affymetrix probe sets: Dr.13362.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000119722
Ensembl peptide - ENSDARP00000154572
swissprot - E9QDP2
ZFIN ID - ZDB-GENE-020809-3
Ensembl - ENSDARG00000055969
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RFC3ENSGALG00000017064Gallus gallus
 RFC3ENSG00000133119Homo sapiens
 Rfc3ENSMUSG00000033970Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003593  AAA+ ATPase domain
 IPR008921  DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006260 DNA replication IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
Translesion synthesis by REV1
Recognition of DNA damage by PCNA-containing replication complex
Translesion Synthesis by POLH
Polymerase switching on the C-strand of the telomere
Activation of ATR in response to replication stress
PCNA-Dependent Long Patch Base Excision Repair
Translesion synthesis by POLK
Translesion synthesis by POLI
Termination of translesion DNA synthesis
HDR through Single Strand Annealing (SSA)
HDR through Homologous Recombination (HRR)
Processing of DNA double-strand break ends
Gap-filling DNA repair synthesis and ligation in GG-NER
Dual Incision in GG-NER
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
Regulation of TP53 Activity through Phosphorylation
Polymerase switching
G2/M DNA damage checkpoint


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr