ENSDARG00000056235


Danio rerio

Features
Gene ID: ENSDARG00000056235
  
Biological name :smndc1
  
Synonyms : Q7ZV80 / smndc1 / survival motor neuron domain containing 1
  
Possible biological names infered from orthology : Mus musculus survival motor neuron domain containing 1 (Smndc1), transcript variant 2, mRNA. / O75940 / Q8BGT7
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 20237727
Gene end: 20243962
  
Corresponding Affymetrix probe sets: Dr.9205.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000146987
Ensembl peptide - ENSDARP00000038215
NCBI entrez gene - 572679     See in Manteia.
RefSeq - NM_212601
RefSeq Peptide - NP_997766
swissprot - B2GRC5
swissprot - Q7ZV80
ZFIN ID - ZDB-GENE-030131-614
Ensembl - ENSDARG00000056235
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMNDC1ENSGALG00000008561Gallus gallus
 O75940ENSG00000119953Homo sapiens
 Q8BGT7ENSMUSG00000025024Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002999  Tudor domain
 IPR010304  Survival motor neuron


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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