ENSG00000119953


Homo sapiens

Features
Gene ID: ENSG00000119953
  
Biological name :SMNDC1
  
Synonyms : O75940 / SMNDC1 / survival motor neuron domain containing 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: -1
Band: q25.2
Gene start: 110290730
Gene end: 110304951
  
Corresponding Affymetrix probe sets: 200071_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000358605
Ensembl peptide - ENSP00000358616
NCBI entrez gene - 10285     See in Manteia.
OMIM - 603519
RefSeq - XM_005269382
RefSeq - NM_005871
RefSeq Peptide - NP_005862
swissprot - O75940
Ensembl - ENSG00000119953
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q7ZV80ENSDARG00000056235Danio rerio
 SMNDC1ENSGALG00000008561Gallus gallus
 Q8BGT7ENSMUSG00000025024Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002999  Tudor domain
 IPR010304  Survival motor neuron


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000375 RNA splicing, via transesterification reactions TAS
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006915 apoptotic process TAS
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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