ENSMUSG00000025024


Mus musculus

Features
Gene ID: ENSMUSG00000025024
  
Biological name :Smndc1
  
Synonyms : Mus musculus survival motor neuron domain containing 1 (Smndc1), transcript variant 2, mRNA. / Q8BGT7 / Smndc1
  
Possible biological names infered from orthology : O75940 / survival motor neuron domain containing 1
  
Species: Mus musculus
  
Chr. number: 19
Strand: -1
Band: D2
Gene start: 53379214
Gene end: 53390573
  
Corresponding Affymetrix probe sets: 10468519 (MoGene1.0st)   10532275 (MoGene1.0st)   1429043_at (Mouse Genome 430 2.0 Array)   1443396_at (Mouse Genome 430 2.0 Array)   1452999_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000025997
NCBI entrez gene - 76479     See in Manteia.
MGI - MGI:1923729
RefSeq - XM_006527442
RefSeq - NM_001356986
RefSeq - NM_172429
RefSeq - XM_006527440
RefSeq - XM_006527441
RefSeq Peptide - NP_001343915
RefSeq Peptide - NP_766017
swissprot - Q8BGT7
Ensembl - ENSMUSG00000025024
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q7ZV80ENSDARG00000056235Danio rerio
 SMNDC1ENSGALG00000008561Gallus gallus
 O75940ENSG00000119953Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002999  Tudor domain
 IPR010304  Survival motor neuron


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr