ENSDARG00000056473


Danio rerio

Features
Gene ID: ENSDARG00000056473
  
Biological name :chaf1b
  
Synonyms : chaf1b / chromatin assembly factor 1, subunit B
  
Possible biological names infered from orthology : Q13112 / Q9D0N7
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 30543139
Gene end: 30555725
  
Corresponding Affymetrix probe sets: Dr.3522.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000073678
NCBI entrez gene - 406285     See in Manteia.
RefSeq - NM_001328129
RefSeq Peptide - NP_001315058
swissprot - E7EYR2
ZFIN ID - ZDB-GENE-040426-1947
Ensembl - ENSDARG00000056473
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CHAF1BENSGALG00000016042Gallus gallus
 CHAF1BENSG00000159259Homo sapiens
 Chaf1bENSMUSG00000022945Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR029129  Chromatin assembly factor 1 subunit B, C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000278 mitotic cell cycle IMP
 biological_processGO:0006334 nucleosome assembly IBA
 biological_processGO:0048568 embryonic organ development IMP
 biological_processGO:0060041 retina development in camera-type eye IMP
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0033186 CAF-1 complex IBA
 molecular_functionGO:0042393 histone binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain degenerate , abnormal
Show

 ZFA:0000035 lens lens protruding out of eye , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000075 spinal cord spinal cord degenerate , abnormal
Show

 ZFA:0000107 eye eye degenerate , abnormal
eye decreased size , abnormal
eye quality , abnormal
Show

 ZFA:0000114 heart heart shape , abnormal
Show

 ZFA:0000152 retina retina decreased size , abnormal
retina apoptotic , abnormal
retina lacks all parts of type amacrine cell , abnormal
retina lacks all parts of type Muller cell , abnormal
retina quality , abnormal
Show

 ZFA:0000217 inner ear inner ear decreased size , abnormal
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 ZFA:0001094 whole organism whole organism lacks all parts of type swim bladder , abnormal
whole organism lacks all parts of type pectoral fin , abnormal
whole organism lacks all parts of type mandibular arch skeleton , abnormal
whole organism lacks all parts of type eye , abnormal
whole organism lethal (sensu genetics) , abnormal
Show

 ZFA:0001161 pectoral fin pectoral fin decreased size , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton degenerate , abnormal
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 ZFA:0001267 cranial vasculature cranial vasculature morphology , abnormal
Show

 ZFA:0001580 neurocranium neurocranium decreased size , abnormal
Show

 ZFA:0001613 pharyngeal arch 3-7 pharyngeal arch 3-7 decreased size , abnormal
pharyngeal arch 3-7 aplastic , abnormal
Show

 ZFA:0009262 retinal cone cell retinal cone cell decreased amount , abnormal
Show

 ZFA:0009275 retinal rod cell retinal rod cell decreased amount , abnormal
Show

 ZFA:0009310 retinal ganglion cell retinal ganglion cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr