ENSDARG00000056515


Danio rerio

Features
Gene ID: ENSDARG00000056515
  
Biological name :spsb1
  
Synonyms : splA/ryanodine receptor domain and SOCS box containing 1 / spsb1
  
Possible biological names infered from orthology : Q96BD6 / Q9D5L7 / SPRY domain-containing SOCS box protein 1
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 22496314
Gene end: 22523303
  
Corresponding Affymetrix probe sets: Dr.7322.1.A1_at (Zebrafish Array)   NM_001025460_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000073475
NCBI entrez gene - 334190     See in Manteia.
RefSeq - XM_021469752
RefSeq - NM_001025460
RefSeq Peptide - NP_001020631
swissprot - Q4V8W1
ZFIN ID - ZDB-GENE-030131-6122
Ensembl - ENSDARG00000056515
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SPSB1ENSGALG00000002506Gallus gallus
 SPSB1ENSG00000171621Homo sapiens
 Spsb1ENSMUSG00000039911Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
spsb4a / splA/ryanodine receptor domain and SOCS box containing 4a / SPSB4* / Q96A44* / Q8R5B6* / SPRY domain-containing SOCS box protein 4 * / splA/ryanodine receptor domain and SOCS box c...ENSDARG0000001608477
spsb4b / splA/ryanodine receptor domain and SOCS box containing 4bENSDARG0000004053863
si:ch1073-228j22.2 / SPSB2* / Q99619* / O88838* / SPRY domain-containing SOCS box protein 2 * / splA/ryanodine receptor domain and SOCS box containing 2*ENSDARG0000008898534
fbxo45 / F-box protein 45 / P0C2W1* / Q8K3B1* / F-box/SPRY domain-containing protein 1 *ENSDARG0000007149229


Protein motifs (from Interpro)
Interpro ID Name
 IPR001496  SOCS box domain
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Neddylation
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr