ENSDARG00000056656


Danio rerio

Features
Gene ID: ENSDARG00000056656
  
Biological name :tspan18a
  
Synonyms : tetraspanin 18a / tspan18a
  
Possible biological names infered from orthology : Q80WR1 / Q96SJ8 / tetraspanin 18 / TSPAN18
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 26762717
Gene end: 26837282
  
Corresponding Affymetrix probe sets: Dr.10389.1.A1_at (Zebrafish Array)   NM_001002734_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000114616
Ensembl peptide - ENSDARP00000131977
Ensembl peptide - ENSDARP00000149840
NCBI entrez gene - 437007     See in Manteia.
RefSeq - NM_001002734
RefSeq - XM_005172271
RefSeq Peptide - NP_001002734
swissprot - Q6DGC4
swissprot - F1QI47
ZFIN ID - ZDB-GENE-040718-232
Ensembl - ENSDARG00000056656
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TSPAN18ENSGALG00000036901Gallus gallus
 Q96SJ8ENSG00000157570Homo sapiens
 Q80WR1ENSMUSG00000027217Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tspan18b / tetraspanin 18b / Q80WR1* / Q96SJ8* / TSPAN18* / tetraspanin 18*ENSDARG0000001501584
tspan9a / tetraspanin 9a / O75954* / Q8BJU2* / TSPAN9* / tetraspanin 9* / Mus musculus tetraspanin 9 (Tspan9), transcript variant 2, mRNA.*ENSDARG0000002529933
Q6GMK6 / tspan9b / tetraspanin 9b / O75954* / Q8BJU2* / TSPAN9* / tetraspanin 9* / Mus musculus tetraspanin 9 (Tspan9), transcript variant 2, mRNA.*ENSDARG0000004570632
tspan35 / tetraspanin 35ENSDARG0000002575731
tspan34 / tetraspanin 34ENSDARG0000010395130
tspan1 / tetraspanin 1 / O60635* / Q99J59*ENSDARG0000005202729
cd82a / CD82 molecule a / CD82* / P27701* / P40237* / CD82 molecule* / CD82 antigen *ENSDARG0000001909827
zgc:64051 / CD53* / P19397* / Q61451* / CD53 molecule* / Leukocyte surface antigen CD53 *ENSDARG0000006823326
cd82b / CD82 molecule b / CD82* / P27701* / P40237* / CD82 molecule* / CD82 antigen *ENSDARG0000002607026
tspan4b / tetraspanin 4bENSDARG0000007039126
cd9b / CD9 molecule b / CD9* / P21926* / P40240* / CD9 molecule* / CD9 antigen *ENSDARG0000001669126
tspan4a / tetraspanin 4a / O14817* / TSPAN4* / tetraspanin 4*ENSDARG0000008935425
tspan2a / tetraspanin 2a / O60636* / Q922J6* / TSPAN2* / tetraspanin 2*ENSDARG0000000375425
cd9a / CD9 molecule a / CD9* / P21926* / P40240* / CD9 molecule* / CD9 antigen *ENSDARG0000000584225
cd81a / CD81 molecule a / CD81* / P35762* / P60033* / CD81 molecule* / CD81 antigen *ENSDARG0000003608024
tspan2b / tetraspanin 2b / O60636* / Q922J6* / TSPAN2* / tetraspanin 2*ENSDARG0000005920223
cd81b / CD81 molecule b / CD81* / P60033* / CD81 molecule*ENSDARG0000002243722
zgc:171713ENSDARG0000007551522
si:ch73-139j3.4 / P0C672* / TSPAN19* / tetraspanin 19*ENSDARG0000008804417


Protein motifs (from Interpro)
Interpro ID Name
 IPR000301  Tetraspanin
 IPR008952  Tetraspanin, EC2 domain superfamily
 IPR018499  Tetraspanin/Peripherin
 IPR018503  Tetraspanin, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007166 cell surface receptor signaling pathway IBA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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