Manteia

ENSMUSG00000027217

Mus musculus

Features

Gene ID:	ENSMUSG00000027217

Biological name :	Tspan18

Synonyms :	Q80WR1 / Tetraspanin-18 / Tspan18

Possible biological names infered from orthology :	Q96SJ8

Species:	Mus musculus

Chr. number:	2
Strand:	-1
Band:	E1
Gene start:	93201760
Gene end:	93334505

Corresponding Affymetrix probe sets:	10485198 (MoGene1.0st) 1429856_at (Mouse Genome 430 2.0 Array) 1437095_at (Mouse Genome 430 2.0 Array) 1442174_at (Mouse Genome 430 2.0 Array)

Cross references:	Ensembl peptide - ENSMUSP00000028646 Ensembl peptide - ENSMUSP00000106896 NCBI entrez gene - 241556 See in Manteia. MGI - MGI:1917186 RefSeq - XM_011239525 RefSeq - NM_183180 RefSeq - XM_006499476 RefSeq - XM_006499477 RefSeq - XM_006499474 RefSeq - XM_006499475 RefSeq Peptide - NP_899003 swissprot - Q80WR1 Ensembl - ENSMUSG00000027217

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
Q99J59 / Tspan1 / Tetraspanin-1 / O60635*	ENSMUSG00000028699	33
Q8BJU2 / Tspan9 / Mus musculus tetraspanin 9 (Tspan9), transcript variant 2, mRNA. / O75954* / tetraspanin 9*	ENSMUSG00000030352	31
Cd53 / Q61451 / Leukocyte surface antigen CD53 / P19397* / CD53 molecule*	ENSMUSG00000040747	27
Q9DCK3 / Tspan4 / tetraspanin 4 / O14817*	ENSMUSG00000025511	27
Q8R3G9 / Tspan8 / Tetraspanin-8 / P19075*	ENSMUSG00000034127	27
Cd9 / P40240 / CD9 antigen / P21926* / CD9 molecule*	ENSMUSG00000030342	26
Cd81 / P35762 / CD81 antigen / P60033* / CD81 molecule*	ENSMUSG00000037706	25
Cd37 / Q61470 / Leukocyte antigen CD37 / P11049* / CD37 molecule*	ENSMUSG00000030798	25
Cd82 / P40237 / CD82 antigen / P27701* / CD82 molecule*	ENSMUSG00000027215	23
Q922J6 / Tspan2 / tetraspanin 2 / O60636*	ENSMUSG00000027858	22

Protein motifs (from Interpro)

Interpro ID	Name
IPR000301	Tetraspanin
IPR008952	Tetraspanin, EC2 domain superfamily
IPR018499	Tetraspanin/Peripherin
IPR018503	Tetraspanin, conserved site

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0007166	cell surface receptor signaling pathway	IBA
cellular_component	GO:0005887	integral component of plasma membrane	IBA
cellular_component	GO:0016020	membrane	IEA
cellular_component	GO:0016021	integral component of membrane	IEA
molecular_function	GO:0003674	molecular_function	ND

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

ID	Phenotype	Definition	Genetic BG
MP:0002757	reduced vertical activity	"lesser than average time spent jumping or rearing" [J:82829, pvb:Pierre Vanden Borre , Mouse Genome Informatics Curator]	Show Allelic Composition: Trip13^{tm1.1(KOMP)Vlcg}/Trip13^{tm1.1(KOMP)Vlcg} Genetic Background: C57BL/6N-Trip13^{tm1.1(KOMP)Vlcg}/Ucd
MP:0005561	increased mean corpuscular hemoglobin	"greater than the average levels of hemoglobin contained in an erythrocyte" [RGD:Rat Genome Database submission, Stedman s Medical Dictionary:ISBN 0-683-40008-8]	Show Allelic Composition: Trip13^{tm1.1(KOMP)Vlcg}/Trip13^{tm1.1(KOMP)Vlcg} Genetic Background: C57BL/6N-Trip13^{tm1.1(KOMP)Vlcg}/Ucd
MP:0013279	increased fasted circulating glucose level	"increase in the amount of glucose in the blood at some defined time point after eating compared to controls" [MGI:Armida_Di_Fenza]	Show Allelic Composition: Trip13^{tm1.1(KOMP)Vlcg}/Trip13^{tm1.1(KOMP)Vlcg} Genetic Background: C57BL/6N-Trip13^{tm1.1(KOMP)Vlcg}/Ucd

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr