ENSDARG00000057556


Danio rerio

Features
Gene ID: ENSDARG00000057556
  
Biological name :rpl17
  
Synonyms : ribosomal protein L17 / rpl17
  
Possible biological names infered from orthology : Gm6133 / P18621 / RPL17-C18orf32 / RPL17-C18orf32 readthrough
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 18997503
Gene end: 19067517
  
Corresponding Affymetrix probe sets: Dr.1351.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000122841
Ensembl peptide - ENSDARP00000145162
Ensembl peptide - ENSDARP00000113553
Ensembl peptide - ENSDARP00000115184
Ensembl peptide - ENSDARP00000119756
NCBI entrez gene - 336641     See in Manteia.
RefSeq - NM_001319650
RefSeq - NM_001243037
RefSeq Peptide - NP_001229966
RefSeq Peptide - NP_001306579
swissprot - Q7T1K0
swissprot - E9QHB7
ZFIN ID - ZDB-GENE-030131-8585
Ensembl - ENSDARG00000057556
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000041500Gallus gallus
 ENSGALG00000040263Gallus gallus
 RPL17ENSGALG00000036774Gallus gallus
 RPL17ENSG00000265681Homo sapiens
 RPL17-C18orf32ENSG00000215472Homo sapiens
 Gm6133ENSMUSG00000090451Mus musculus
 Rpl17ENSMUSG00000062328Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001063  Ribosomal protein L22/L17
 IPR005721  Ribosomal protein L22/L17, eukaryotic/archaeal
 IPR018260  Ribosomal protein L22/L17, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0015934 large ribosomal subunit IEA
 molecular_functionGO:0003735 structural constituent of ribosome IEA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr