ENSGALG00000040263


Gallus gallus

Features
Gene ID: ENSGALG00000040263
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : P18621 / ribosomal protein L17 / RPL17 / RPL17-C18orf32 / RPL17-C18orf32 readthrough
  
Species: Gallus gallus
  
Chr. number: W
Strand: 1
Band:
Gene start: 2000281
Gene end: 2003728
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000044631
Ensembl peptide - ENSGALP00000064758
Ensembl peptide - ENSGALP00000062308
Ensembl peptide - ENSGALP00000061914
Ensembl peptide - ENSGALP00000058788
Ensembl peptide - ENSGALP00000055584
Ensembl peptide - ENSGALP00000043883
NCBI entrez gene - 107049046     See in Manteia.
RefSeq - XM_001231653
RefSeq - XM_015300416
RefSeq - XM_015300417
swissprot - A0A1D5PR07
swissprot - A0A1L1S043
swissprot - A0A1D5PPM0
swissprot - A0A1L1RSL5
swissprot - A0A1D5PR40
Ensembl - ENSGALG00000040263
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpl17ENSDARG00000057556Danio rerio
 RPL17ENSG00000265681Homo sapiens
 RPL17-C18orf32ENSG00000215472Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RPL17ENSGALG0000003677480
Gm6133*ENSGALG0000004150042


Protein motifs (from Interpro)
Interpro ID Name
 IPR001063  Ribosomal protein L22/L17
 IPR005721  Ribosomal protein L22/L17, eukaryotic/archaeal
 IPR018260  Ribosomal protein L22/L17, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0015934 large ribosomal subunit IEA
 molecular_functionGO:0003735 structural constituent of ribosome IEA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr