ENSDARG00000058328


Danio rerio

Features
Gene ID: ENSDARG00000058328
  
Biological name :lsm7
  
Synonyms : lsm7 / LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
  
Possible biological names infered from orthology : Mus musculus LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated (Lsm7), transcript variant 3, mRNA. / Q9CQQ8 / Q9UK45
  
Species: Danio rerio
  
Chr. number: 22
Strand: 1
Band:
Gene start: 10752511
Gene end: 10756047
  
Corresponding Affymetrix probe sets: Dr.10033.1.S1_at (Zebrafish Array)   NM_001048006_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000153200
Ensembl peptide - ENSDARP00000075631
NCBI entrez gene - 573047     See in Manteia.
RefSeq - NM_001048006
RefSeq Peptide - NP_001041471
swissprot - A4FVI7
swissprot - Q7SXE2
ZFIN ID - ZDB-GENE-030131-8284
Ensembl - ENSDARG00000058328
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LSM7ENSGALG00000000408Gallus gallus
 LSM7ENSG00000130332Homo sapiens
 Lsm7ENSMUSG00000035215Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR017132  Sm-like protein Lsm7


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IEA
 biological_processGO:0006396 RNA processing IBA
 cellular_componentGO:0005688 U6 snRNP IBA
 cellular_componentGO:0005689 U12-type spliceosomal complex IBA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 cellular_componentGO:0097526 spliceosomal tri-snRNP complex IBA
 cellular_componentGO:1990726 Lsm1-7-Pat1 complex IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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